RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00747 CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS GI Intron HOMO SAPIENS RCSB Protein Data Bank 1U6B 222 PDB_00749 GUANINE RIBOSWITCH BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1U8D 67 PDB_00759 THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1UVN 18 PDB_00760 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN EDT Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VBX 73 PDB_00761 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, AND MN Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VBY 73 PDB_00762 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN BA2 Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VBZ 73 PDB_00763 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN IMI Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VC0 73 PDB_00764 CRYSTAL STRUCTURE OF THE WILD TYPE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, IN EDTA SOLUTIO Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VC5 70 PDB_00765 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRODUCT WITH C75U MUTAION, CLEAVED I Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VC6 72 PDB_00766 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN SR2 Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VC7 74

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)