RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01316 d.16.e.S.nipponica 16S rRNA Unknown Gutell Lab CRW Site d.16.e.S.nipponica 1807 CRW_01317 d.16.e.S.pupula 16S rRNA Unknown Gutell Lab CRW Site d.16.e.S.pupula 1787 CRW_01320 d.16.e.T.antarctica 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.antarctica 1796 CRW_01323 d.16.e.T.contejeani 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.contejeani 1388 CRW_01326 d.16.e.T.eccentrica 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.eccentrica 1806 CRW_01330 d.16.e.T.hominis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.hominis 1362 CRW_01331 d.16.e.T.pseudonana 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.pseudonana 1808 CRW_01333 d.16.e.T.undulatum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.undulatum 1780 CRW_01337 d.16.e.Thalassionema.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Thalassionema.sp 1792 CRW_01342 d.16.e.Undatella.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Undatella.sp 1801

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)