RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01295 d.16.e.Pleistophora.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Pleistophora.sp 1254 CRW_01296 d.16.e.Pleistophora.sp.LS 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Pleistophora.sp.LS 1305 CRW_01297 d.16.e.Pseudogomphonema.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Pseudogomphonema.sp 1793 CRW_01299 d.16.e.R.belgicae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.R.belgicae 1794 CRW_01300 d.16.e.R.carriebowensis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.R.carriebowensis 1841 CRW_01301 d.16.e.R.leptophylla 16S rRNA Unknown Gutell Lab CRW Site d.16.e.R.leptophylla 1771 CRW_01302 d.16.e.R.maculata 16S rRNA Unknown Gutell Lab CRW Site d.16.e.R.maculata 1784 CRW_01305 d.16.e.R.parvula 16S rRNA Unknown Gutell Lab CRW Site d.16.e.R.parvula 1790 CRW_01309 d.16.e.S.costatum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.S.costatum 1802 CRW_01314 d.16.e.S.lophii 16S rRNA Unknown Gutell Lab CRW Site d.16.e.S.lophii 1370

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)