RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01197 d.16.e.Enterocytozoonidae.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Enterocytozoonidae.sp 1298 CRW_01198 d.16.e.F.islandica 16S rRNA Unknown Gutell Lab CRW Site d.16.e.F.islandica 1793 CRW_01199 d.16.e.F.magnivora 16S rRNA Unknown Gutell Lab CRW Site d.16.e.F.magnivora 1304 CRW_01200 d.16.e.F.striatula 16S rRNA Unknown Gutell Lab CRW Site d.16.e.F.striatula 1793 CRW_01203 d.16.e.G.atherinae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.G.atherinae 1357 CRW_01205 d.16.e.G.marina 16S rRNA Unknown Gutell Lab CRW Site d.16.e.G.marina 1788 CRW_01210 d.16.e.G.vagum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.G.vagum 1769 CRW_01214 d.16.e.H.anguillarum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.H.anguillarum 1366 CRW_01215 d.16.e.H.milleri 16S rRNA Unknown Gutell Lab CRW Site d.16.e.H.milleri 1318 CRW_01216 d.16.e.H.plana 16S rRNA Unknown Gutell Lab CRW Site d.16.e.H.plana 1770

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)