RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00814 b.I1.e.B.fuscopurpurea.7.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.B.fuscopurpurea.7.C1.SSU.516 503 CRW_00815 b.I1.e.B.fuscopurpurea.8.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.B.fuscopurpurea.8.C1.SSU.516 566 CRW_00816 b.I1.e.Bangia.sp.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.Bangia.sp.C1.SSU.516 537 CRW_00820 b.I1.e.E.nigra.2.E.SSU.989 GI Intron Unknown Gutell Lab CRW Site b.I1.e.E.nigra.2.E.SSU.989 523 CRW_00849 d.16.a.S.solfataricus.2 16S rRNA Unknown Gutell Lab CRW Site d.16.a.S.solfataricus.2 1496 CRW_00893 d.16.b.C.jejuni 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.jejuni 1515 CRW_00932 d.16.b.H.aurantiacus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.H.aurantiacus 1484 CRW_00967 d.16.b.M.pneumoniae.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.M.pneumoniae.GEN 1517 CRW_00997 d.16.b.R.felis.URRWXCal2 16S rRNA Unknown Gutell Lab CRW Site d.16.b.R.felis.URRWXCal2 1508 CRW_01082 d.16.c.C.humicola 16S rRNA Unknown Gutell Lab CRW Site d.16.c.C.humicola 1496

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)