RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00790 b.16.m.O.berteriana 16S rRNA Unknown Gutell Lab CRW Site b.16.m.O.berteriana 1900 CRW_00791 b.16.m.O.mykiss 16S rRNA Unknown Gutell Lab CRW Site b.16.m.O.mykiss 944 CRW_00792 b.16.m.P.anserina 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.anserina 1779 CRW_00793 b.16.m.P.chrysogenum 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.chrysogenum 1449 CRW_00794 b.16.m.P.dolloi 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.dolloi 933 CRW_00795 b.16.m.P.littoralis 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.littoralis 1519 CRW_00796 b.16.m.P.lividus 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.lividus 878 CRW_00797 b.16.m.P.minor 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.minor 1178 CRW_00798 b.16.m.P.tetraurelia 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.tetraurelia 1677 CRW_00799 b.16.m.P.troglodytes 16S rRNA Unknown Gutell Lab CRW Site b.16.m.P.troglodytes 949

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)