RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00656 a.I1.e.E.dermatitidis.C1.SSU.943 GI Intron Unknown Gutell Lab CRW Site a.I1.e.E.dermatitidis.C1.SSU.943 426 CRW_00657 a.I1.e.G.planctonica.C1.SSU.943 GI Intron Unknown Gutell Lab CRW Site a.I1.e.G.planctonica.C1.SSU.943 461 CRW_00658 a.I1.e.G.spirotaenia.C1.SSU.1506 GI Intron Unknown Gutell Lab CRW Site a.I1.e.G.spirotaenia.C1.SSU.1506 387 CRW_00659 a.I1.e.L.dispersa.UNK.SSU.1046 GI Intron Unknown Gutell Lab CRW Site a.I1.e.L.dispersa.UNK.SSU.1046 255 CRW_00660 a.I1.e.L.dispersa.UNK.SSU.114 GI Intron Unknown Gutell Lab CRW Site a.I1.e.L.dispersa.UNK.SSU.114 211 CRW_00661 a.I1.e.L.dispersa.UNK.SSU.1210 GI Intron Unknown Gutell Lab CRW Site a.I1.e.L.dispersa.UNK.SSU.1210 221 CRW_00662 a.I1.e.L.dispersa.UNK.SSU.1516 GI Intron Unknown Gutell Lab CRW Site a.I1.e.L.dispersa.UNK.SSU.1516 240 CRW_00663 a.I1.e.L.dispersa.UNK.SSU.287 GI Intron Unknown Gutell Lab CRW Site a.I1.e.L.dispersa.UNK.SSU.287 229 CRW_00664 a.I1.e.L.dispersa.UNK.SSU.516 GI Intron Unknown Gutell Lab CRW Site a.I1.e.L.dispersa.UNK.SSU.516 328 CRW_00665 a.I1.e.L.dispersa.UNK.SSU.789 GI Intron Unknown Gutell Lab CRW Site a.I1.e.L.dispersa.UNK.SSU.789 218

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)