RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00193 d.16.b.S.albidoflavus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.albidoflavus 1527 CRW_00194 d.16.b.S.ambofaciens 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.ambofaciens 1529 CRW_00195 d.16.b.S.aurantia 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.aurantia 1560 CRW_00196 d.16.b.S.aureus 16S rRNA Staphylococcus aureus Gutell Lab CRW Site d.16.b.S.aureus 1555 CRW_00197 d.16.b.S.aureus.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.aureus.GEN 1555 CRW_00198 d.16.b.S.bikiniensis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.bikiniensis 1525 CRW_00199 d.16.b.S.bluensis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.bluensis 1528 CRW_00200 d.16.b.S.bottropensis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.bottropensis 1531 CRW_00201 d.16.b.S.caelestis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.caelestis 1526 CRW_00202 d.16.b.S.coelicolor 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.coelicolor 1529

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)