RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00317 STR.PUR. SRP RNA Unknown SRP Database STR.PUR. 301 SRP_00321 SUL.SO-A SRP RNA Sulfolobus solfataricus SRP Database SUL.SO-A 309 SRP_00322 SUL.SO-B SRP RNA Sulfolobus solfataricus SRP Database SUL.SO-B 312 SRP_00323 SUL.TOK. SRP RNA Unknown SRP Database SUL.TOK. 308 SRP_00327 TET.NIG. SRP RNA Unknown SRP Database TET.NIG. 299 SRP_00328 TET.ROS. SRP RNA Unknown SRP Database TET.ROS. 282 SRP_00329 TET.THE. SRP RNA Tetrahymena thermophila SRP Database TET.THE. 283 SRP_00330 THE.ACI. SRP RNA Unknown SRP Database THE.ACI. 317 SRP_00331 THE.ANN. SRP RNA Unknown SRP Database THE.ANN. 275 SRP_00332 THE.CEL. SRP RNA Unknown SRP Database THE.CEL. 318

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)