RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00022 BAC.AMY. SRP RNA Unknown SRP Database BAC.AMY. 271 SRP_00023 BAC.ANT. SRP RNA Unknown SRP Database BAC.ANT. 205 SRP_00024 BAC.BRE. SRP RNA Unknown SRP Database BAC.BRE. 275 SRP_00025 BAC.CER. SRP RNA Unknown SRP Database BAC.CER. 266 SRP_00026 BAC.CIR. SRP RNA Unknown SRP Database BAC.CIR. 272 SRP_00027 BAC.HAL. SRP RNA Unknown SRP Database BAC.HAL. 273 SRP_00028 BAC.LI-A SRP RNA Unknown SRP Database BAC.LI-A 271 SRP_00029 BAC.LI-B SRP RNA Unknown SRP Database BAC.LI-B 271 SRP_00030 BAC.MAC. SRP RNA Unknown SRP Database BAC.MAC. 272 SRP_00031 BAC.MEG. SRP RNA Unknown SRP Database BAC.MEG. 270

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)