RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_01040 Sprinzl tRNA RT1023 tRNA Unknown Sprinzl tRNA Database RT1023 75 SPR_01051 Sprinzl tRNA RT7553 tRNA Unknown Sprinzl tRNA Database RT7553 72 SPR_01088 Sprinzl tRNA RW1010 tRNA Unknown Sprinzl tRNA Database RW1010 77 SPR_01095 Sprinzl tRNA RW1940 tRNA Unknown Sprinzl tRNA Database RW1940 76 SPR_01103 Sprinzl tRNA RW4640 tRNA Unknown Sprinzl tRNA Database RW4640 60 SPR_01106 Sprinzl tRNA RW7550 tRNA Unknown Sprinzl tRNA Database RW7550 72 SPR_01117 Sprinzl tRNA RX1010 tRNA Unknown Sprinzl tRNA Database RX1010 78 SPR_01143 Sprinzl tRNA RX7730 tRNA Unknown Sprinzl tRNA Database RX7730 72 SPR_01157 Sprinzl tRNA RY1020 tRNA Unknown Sprinzl tRNA Database RY1020 75 SPR_01185 Sprinzl tRNA RZ7540 tRNA Unknown Sprinzl tRNA Database RZ7540 87

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)