RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00501 Sprinzl tRNA RX0820 tRNA Unknown Sprinzl tRNA Database RX0820 78 SPR_00502 Sprinzl tRNA RX0900 tRNA Unknown Sprinzl tRNA Database RX0900 77 SPR_00503 Sprinzl tRNA RX1140 tRNA Unknown Sprinzl tRNA Database RX1140 76 SPR_00504 Sprinzl tRNA RX1180 tRNA Unknown Sprinzl tRNA Database RX1180 76 SPR_00505 Sprinzl tRNA RX1300 tRNA Unknown Sprinzl tRNA Database RX1300 77 SPR_00506 Sprinzl tRNA RX1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RX1540 77 SPR_00507 Sprinzl tRNA RX1580 tRNA Unknown Sprinzl tRNA Database RX1580 77 SPR_00508 Sprinzl tRNA RX1581 tRNA Unknown Sprinzl tRNA Database RX1581 77 SPR_00509 Sprinzl tRNA RX1660 tRNA Unknown Sprinzl tRNA Database RX1660 77 SPR_00510 Sprinzl tRNA RX1661 tRNA Unknown Sprinzl tRNA Database RX1661 77

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)