RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00350 Sprinzl tRNA RR0502 tRNA Unknown Sprinzl tRNA Database RR0502 78 SPR_00351 Sprinzl tRNA RR1140 tRNA Unknown Sprinzl tRNA Database RR1140 77 SPR_00352 Sprinzl tRNA RR1141 tRNA Unknown Sprinzl tRNA Database RR1141 77 SPR_00353 Sprinzl tRNA RR1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RR1540 76 SPR_00354 Sprinzl tRNA RR1660 tRNA Unknown Sprinzl tRNA Database RR1660 76 SPR_00355 Sprinzl tRNA RR1661 tRNA Unknown Sprinzl tRNA Database RR1661 77 SPR_00356 Sprinzl tRNA RR1662 tRNA Unknown Sprinzl tRNA Database RR1662 75 SPR_00357 Sprinzl tRNA RR1663 tRNA Unknown Sprinzl tRNA Database RR1663 77 SPR_00358 Sprinzl tRNA RR1664 tRNA Unknown Sprinzl tRNA Database RR1664 77 SPR_00359 Sprinzl tRNA RR2530 tRNA Unknown Sprinzl tRNA Database RR2530 77

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)