RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00300 Sprinzl tRNA RN8560 tRNA Unknown Sprinzl tRNA Database RN8560 76 SPR_00301 Sprinzl tRNA RN9160 tRNA Unknown Sprinzl tRNA Database RN9160 77 SPR_00302 Sprinzl tRNA RN9161 tRNA Unknown Sprinzl tRNA Database RN9161 77 SPR_00303 Sprinzl tRNA RN9280 tRNA Unknown Sprinzl tRNA Database RN9280 77 SPR_00304 Sprinzl tRNA RN9990 tRNA Unknown Sprinzl tRNA Database RN9990 77 SPR_00305 Sprinzl tRNA RN9991 tRNA HUMAN Sprinzl tRNA Database RN9991 75 SPR_00306 Sprinzl tRNA RP0180 tRNA Unknown Sprinzl tRNA Database RP0180 75 SPR_00307 Sprinzl tRNA RP0181 tRNA Unknown Sprinzl tRNA Database RP0181 75 SPR_00308 Sprinzl tRNA RP0220 tRNA Unknown Sprinzl tRNA Database RP0220 77 SPR_00309 Sprinzl tRNA RP0260 tRNA Unknown Sprinzl tRNA Database RP0260 77

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)