RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00280 Sprinzl tRNA RM4400 tRNA Unknown Sprinzl tRNA Database RM4400 76 SPR_00281 Sprinzl tRNA RM4640 tRNA Unknown Sprinzl tRNA Database RM4640 64 SPR_00282 Sprinzl tRNA RM5220 tRNA Unknown Sprinzl tRNA Database RM5220 72 SPR_00283 Sprinzl tRNA RM7630 tRNA Unknown Sprinzl tRNA Database RM7630 76 SPR_00284 Sprinzl tRNA RM8530 tRNA Unknown Sprinzl tRNA Database RM8530 77 SPR_00285 Sprinzl tRNA RM8560 tRNA Unknown Sprinzl tRNA Database RM8560 77 SPR_00286 Sprinzl tRNA RM9220 tRNA Unknown Sprinzl tRNA Database RM9220 76 SPR_00287 Sprinzl tRNA RM9330 tRNA Unknown Sprinzl tRNA Database RM9330 76 SPR_00288 Sprinzl tRNA RM9990 tRNA Unknown Sprinzl tRNA Database RM9990 76 SPR_00289 Sprinzl tRNA RN0260 tRNA Unknown Sprinzl tRNA Database RN0260 77

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)