RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00209 Sprinzl tRNA RL0260 tRNA Unknown Sprinzl tRNA Database RL0260 85 SPR_00210 Sprinzl tRNA RL0500 tRNA Unknown Sprinzl tRNA Database RL0500 87 SPR_00211 Sprinzl tRNA RL0501 tRNA Unknown Sprinzl tRNA Database RL0501 88 SPR_00212 Sprinzl tRNA RL0502 tRNA Unknown Sprinzl tRNA Database RL0502 88 SPR_00213 Sprinzl tRNA RL0503 tRNA Unknown Sprinzl tRNA Database RL0503 88 SPR_00214 Sprinzl tRNA RL0504 tRNA Unknown Sprinzl tRNA Database RL0504 86 SPR_00215 Sprinzl tRNA RL1140 tRNA Unknown Sprinzl tRNA Database RL1140 85 SPR_00216 Sprinzl tRNA RL1141 tRNA Unknown Sprinzl tRNA Database RL1141 89 SPR_00217 Sprinzl tRNA RL1142 tRNA Unknown Sprinzl tRNA Database RL1142 84 SPR_00218 Sprinzl tRNA RL1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RL1540 87

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)