RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00058 Sprinzl tRNA RE8560 tRNA Unknown Sprinzl tRNA Database RE8560 76 SPR_00059 Sprinzl tRNA RE9160 tRNA Unknown Sprinzl tRNA Database RE9160 75 SPR_00060 Sprinzl tRNA RE9240 tRNA Unknown Sprinzl tRNA Database RE9240 75 SPR_00061 Sprinzl tRNA RE9330 tRNA Unknown Sprinzl tRNA Database RE9330 75 SPR_00062 Sprinzl tRNA RE9990 tRNA HUMAN Sprinzl tRNA Database RE9990 75 SPR_00063 Sprinzl tRNA RF0500 tRNA Unknown Sprinzl tRNA Database RF0500 77 SPR_00064 Sprinzl tRNA RF1140 tRNA Unknown Sprinzl tRNA Database RF1140 76 SPR_00065 Sprinzl tRNA RF1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RF1540 76 SPR_00066 Sprinzl tRNA RF1580 tRNA Unknown Sprinzl tRNA Database RF1580 76 SPR_00067 Sprinzl tRNA RF1660 tRNA Unknown Sprinzl tRNA Database RF1660 76

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)