RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00028 Sprinzl tRNA RD2641 tRNA Unknown Sprinzl tRNA Database RD2641 77 SPR_00029 Sprinzl tRNA RD4670 tRNA Unknown Sprinzl tRNA Database RD4670 73 SPR_00030 Sprinzl tRNA RD4800 tRNA Unknown Sprinzl tRNA Database RD4800 71 SPR_00031 Sprinzl tRNA RD5280 tRNA Unknown Sprinzl tRNA Database RD5280 71 SPR_00032 Sprinzl tRNA RD5281 tRNA Unknown Sprinzl tRNA Database RD5281 72 SPR_00033 Sprinzl tRNA RD5990 tRNA Unknown Sprinzl tRNA Database RD5990 73 SPR_00034 Sprinzl tRNA RD6230 tRNA Unknown Sprinzl tRNA Database RD6230 71 SPR_00035 Sprinzl tRNA RD7630 tRNA Unknown Sprinzl tRNA Database RD7630 75 SPR_00036 Sprinzl tRNA RD7780 tRNA Unknown Sprinzl tRNA Database RD7780 75 SPR_00037 Sprinzl tRNA RD9160 tRNA Unknown Sprinzl tRNA Database RD9160 76

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)