RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00693 Hammerhead ribozyme (type I), RF00163, AF404052.1/70-187 Ham. Ribozyme Unknown Rfam Database RF00163 AF404052.1/187-70 118 RFA_00694 Hammerhead ribozyme (type I), RF00163, AF404053.1/70-186 Ham. Ribozyme Unknown Rfam Database RF00163 AF404053.1/186-70 117 RFA_00695 Hammerhead ribozyme (type I), RF00163, AF404054.1/70-188 Ham. Ribozyme Unknown Rfam Database RF00163 AF404054.1/188-70 119 RFA_00696 Hammerhead ribozyme (type I), RF00163, AF404055.1/70-187 Ham. Ribozyme Unknown Rfam Database RF00163 AF404055.1/187-70 118 RFA_00697 Hammerhead ribozyme (type I), RF00163, AF404059.1/70-187 Ham. Ribozyme Unknown Rfam Database RF00163 AF404059.1/187-70 118 RFA_00698 Hammerhead ribozyme (type I), RF00163, AF404061.1/70-185 Ham. Ribozyme Unknown Rfam Database RF00163 AF404061.1/185-70 116 RFA_00699 Hammerhead ribozyme (type I), RF00163, AF404062.1/178-64 Ham. Ribozyme Unknown Rfam Database RF00163 AF404062.1/64-178 115 RFA_00700 Hammerhead ribozyme (type I), RF00163, AF404063.1/176-63 Ham. Ribozyme Unknown Rfam Database RF00163 AF404063.1/63-176 114 RFA_00701 Hammerhead ribozyme (type I), RF00163, AF404067.1/70-184 Ham. Ribozyme Unknown Rfam Database RF00163 AF404067.1/184-70 115 RFA_00702 Hammerhead ribozyme (type I), RF00163, AF404068.1/70-185 Ham. Ribozyme Unknown Rfam Database RF00163 AF404068.1/185-70 116

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)