RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1

Search results: 3582 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00229 YEAST INITIATOR TRNA tRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1YFG 75 PDB_00239 CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME Ham. Ribozyme Unknown RCSB Protein Data Bank 299D 41 PDB_00244 RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA tRNA YEAST RCSB Protein Data Bank 2TRA 73 PDB_00246 CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED Ham. Ribozyme Unknown RCSB Protein Data Bank 300D 41 PDB_00247 CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKED Ham. Ribozyme Unknown RCSB Protein Data Bank 301D 41 PDB_00251 INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) Ham. Ribozyme Unknown RCSB Protein Data Bank 359D 41 PDB_00255 THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE Ham. Ribozyme Unknown RCSB Protein Data Bank 379D 41 PDB_00259 RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA tRNA YEAST RCSB Protein Data Bank 3TRA 72 PDB_00278 X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 486D 224 PDB_00279 FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE tRNA YEAST RCSB Protein Data Bank 4TNA 76

Analyse the 3582 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 3582 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 3582 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)