RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00702 a.I1.m.A.castellanii.B4.LSU.1931 GI Intron Unknown Gutell Lab CRW Site a.I1.m.A.castellanii.B4.LSU.1931 846 CRW_00703 a.I1.m.M.grisea.B2.ND1 GI Intron Unknown Gutell Lab CRW Site a.I1.m.M.grisea.B2.ND1 285 CRW_00704 a.I1.m.M.senile.B1.OX1 GI Intron Unknown Gutell Lab CRW Site a.I1.m.M.senile.B1.OX1 880 CRW_00705 a.I1.m.M.senile.B2.ND5 GI Intron Unknown Gutell Lab CRW Site a.I1.m.M.senile.B2.ND5 1710 CRW_00706 a.I1.m.N.crassa.B2.ND1 GI Intron Unknown Gutell Lab CRW Site a.I1.m.N.crassa.B2.ND1 1180 CRW_00707 a.I1.m.N.crassa.C1.ND4L GI Intron Unknown Gutell Lab CRW Site a.I1.m.N.crassa.C1.ND4L 1524 CRW_00708 a.I1.m.P.anserina.B2.ND1.i4 GI Intron Unknown Gutell Lab CRW Site a.I1.m.P.anserina.B2.ND1.i4 2630 CRW_00709 a.I1.m.P.anserina.C1.ND1.i1 GI Intron Unknown Gutell Lab CRW Site a.I1.m.P.anserina.C1.ND1.i1 1860 CRW_00710 a.I1.m.P.anserina.C1.ND4L.i1 GI Intron Unknown Gutell Lab CRW Site a.I1.m.P.anserina.C1.ND4L.i1 1443 CRW_00711 a.I1.m.P.anserina.C1.ND4L.i2 GI Intron Unknown Gutell Lab CRW Site a.I1.m.P.anserina.C1.ND4L.i2 2154

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)