RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00612 a.I1.b.S.negevensis.B4.LSU.1931 GI Intron Unknown Gutell Lab CRW Site a.I1.b.S.negevensis.B4.LSU.1931 736 CRW_00613 a.I1.b.Synechococcus.sp2.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.b.Synechococcus.sp2.C3.tLEU 265 CRW_00614 a.I1.c.A.cherimola.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.c.A.cherimola.C3.tLEU 494 CRW_00615 a.I1.c.C.eugametos.A2.PSBC.i1 GI Intron Unknown Gutell Lab CRW Site a.I1.c.C.eugametos.A2.PSBC.i1 1053 CRW_00616 a.I1.c.C.moewusii.B4.PSBA.i2 GI Intron Unknown Gutell Lab CRW Site a.I1.c.C.moewusii.B4.PSBA.i2 1844 CRW_00617 a.I1.c.C.pallidostigmatica.B4.LSU.1931 GI Intron Unknown Gutell Lab CRW Site a.I1.c.C.pallidostigmatica.B4.LSU.1931 924 CRW_00618 a.I1.c.G.prostrata.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.c.G.prostrata.C3.tLEU 336 CRW_00619 a.I1.c.N.tabacum.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.c.N.tabacum.C3.tLEU 575 CRW_00620 a.I1.c.P.thunbergii.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.c.P.thunbergii.C3.tLEU 550 CRW_00621 a.I1.c.S.alterniflora.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.c.S.alterniflora.C3.tLEU 554

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)