RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00582 s.16.b.T.thermophilus.2.schem 16S rRNA Thermus thermophilus Gutell Lab CRW Site s.16.b.T.thermophilus.2.schem 1522 CRW_00583 s.233.a.H.marismortui.3.schem 23S rRNA Unknown Gutell Lab CRW Site s.233.a.H.marismortui.3.schem 2930 CRW_00584 s.233.b.E.coli.schem 23S rRNA Escherichia coli Gutell Lab CRW Site s.233.b.E.coli.schem 2904 CRW_00585 s.5.b.E.coli.schem 5S rRNA Escherichia coli Gutell Lab CRW Site s.5.b.E.coli.schem 120 CRW_00586 s.I1.e.T.thermophila.C1.LSU.1925.schem GI Intron Tetrahymena thermophila Gutell Lab CRW Site s.I1.e.T.thermophila.C1.LSU.1925.schem 506 CRW_00587 s.I2.m.S.cerevisiae.A.OX1.i1.schem GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site s.I2.m.S.cerevisiae.A.OX1.i1.schem 2520 CRW_00588 s.I2.m.S.cerevisiae.B.OX1.i5.schem GII Intron Unknown Gutell Lab CRW Site s.I2.m.S.cerevisiae.B.OX1.i5.schem 905 CRW_00589 a.16.c.C.coccineum 16S rRNA Unknown Gutell Lab CRW Site a.16.c.C.coccineum 1480 CRW_00590 a.16.c.C.ruber 16S rRNA Unknown Gutell Lab CRW Site a.16.c.C.ruber 1497 CRW_00591 a.16.c.E.huxleyi 16S rRNA Unknown Gutell Lab CRW Site a.16.c.E.huxleyi 1483

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)