RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00572 h.233.b.E.coli.hlxnum 23S rRNA Escherichia coli Gutell Lab CRW Site h.233.b.E.coli.hlxnum 2904 CRW_00573 h.5.b.E.coli.hlxnum 5S rRNA Escherichia coli Gutell Lab CRW Site h.5.b.E.coli.hlxnum 120 CRW_00574 h.I2.m.S.cerevisiae.A.OX1.i1.hlxnum GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site h.I2.m.S.cerevisiae.A.OX1.i1.hlxnum 2520 CRW_00575 h.I2.m.S.cerevisiae.B.OX1.i5.hlxnum GII Intron Unknown Gutell Lab CRW Site h.I2.m.S.cerevisiae.B.OX1.i5.hlxnum 905 CRW_00576 m.16.b.E.coli.mhg 16S rRNA Escherichia coli Gutell Lab CRW Site m.16.b.E.coli.mhg 1542 CRW_00577 n.16.b.T.thermophilus.1.num 16S rRNA Thermus thermophilus Gutell Lab CRW Site n.16.b.T.thermophilus.1.num 1518 CRW_00578 n.16.b.T.thermophilus.2.num 16S rRNA Thermus thermophilus Gutell Lab CRW Site n.16.b.T.thermophilus.2.num 1522 CRW_00579 n.233.a.H.marismortui.3.num 23S rRNA Unknown Gutell Lab CRW Site n.233.a.H.marismortui.3.num 2930 CRW_00580 s.16.b.E.coli.schem 16S rRNA Escherichia coli Gutell Lab CRW Site s.16.b.E.coli.schem 1542 CRW_00581 s.16.b.T.thermophilus.1.schem 16S rRNA Thermus thermophilus Gutell Lab CRW Site s.16.b.T.thermophilus.1.schem 1518

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)