RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00522 d.233.c.P.falciparum 23S rRNA Unknown Gutell Lab CRW Site d.233.c.P.falciparum 2700 CRW_00523 d.233.c.Z.mays 23S rRNA Unknown Gutell Lab CRW Site d.233.c.Z.mays 2985 CRW_00524 d.233.e.A.thaliana 23S rRNA Unknown Gutell Lab CRW Site d.233.e.A.thaliana 3539 CRW_00525 d.233.e.G.intestinalis 23S rRNA Unknown Gutell Lab CRW Site d.233.e.G.intestinalis 2850 CRW_00526 d.233.e.O.sativa 23S rRNA Oryza sativa Gutell Lab CRW Site d.233.e.O.sativa 3541 CRW_00527 d.233.e.P.falciparum.A 23S rRNA Unknown Gutell Lab CRW Site d.233.e.P.falciparum.A 3946 CRW_00528 d.233.e.P.falciparum.S 23S rRNA Unknown Gutell Lab CRW Site d.233.e.P.falciparum.S 4381 CRW_00529 d.233.e.S.cerevisiae 23S rRNA Saccharomyces cerevisiae Gutell Lab CRW Site d.233.e.S.cerevisiae 3554 CRW_00530 d.233.m.A.caerulea 23S rRNA Unknown Gutell Lab CRW Site d.233.m.A.caerulea 1035 CRW_00531 d.233.m.A.salina 23S rRNA Unknown Gutell Lab CRW Site d.233.m.A.salina 1148

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)