RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00502 d.233.b.L.monocytogenes.2 23S rRNA Unknown Gutell Lab CRW Site d.233.b.L.monocytogenes.2 2932 CRW_00503 d.233.b.M.genitalium 23S rRNA Unknown Gutell Lab CRW Site d.233.b.M.genitalium 2917 CRW_00504 d.233.b.M.leprae 23S rRNA Unknown Gutell Lab CRW Site d.233.b.M.leprae 3122 CRW_00505 d.233.b.M.luteus 23S rRNA Unknown Gutell Lab CRW Site d.233.b.M.luteus 3094 CRW_00506 d.233.b.M.pneumoniae 23S rRNA Unknown Gutell Lab CRW Site d.233.b.M.pneumoniae 2905 CRW_00507 d.233.b.N.gonorrhoeae 23S rRNA Unknown Gutell Lab CRW Site d.233.b.N.gonorrhoeae 2890 CRW_00508 d.233.b.N.meningitidis 23S rRNA Unknown Gutell Lab CRW Site d.233.b.N.meningitidis 2890 CRW_00509 d.233.b.P.aeruginosa 23S rRNA Unknown Gutell Lab CRW Site d.233.b.P.aeruginosa 2893 CRW_00510 d.233.b.P.shigelloides 23S rRNA Unknown Gutell Lab CRW Site d.233.b.P.shigelloides 2893 CRW_00511 d.233.b.R.amylophilus 23S rRNA Unknown Gutell Lab CRW Site d.233.b.R.amylophilus 2867

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)