RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00481 d.233.b.B.subtilis 23S rRNA Bacillus subtilis Gutell Lab CRW Site d.233.b.B.subtilis 2927 CRW_00482 d.233.b.C.botulinum.2b 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.botulinum.2b 2910 CRW_00483 d.233.b.C.botulinum.a 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.botulinum.a 2896 CRW_00484 d.233.b.C.botulinum.b 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.botulinum.b 2910 CRW_00485 d.233.b.C.botulinum.E 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.botulinum.E 2910 CRW_00486 d.233.b.C.freundii 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.freundii 2906 CRW_00487 d.233.b.C.jejuni 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.jejuni 2907 CRW_00488 d.233.b.C.psittaci 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.psittaci 2942 CRW_00489 d.233.b.C.trachomatis.L2 23S rRNA Unknown Gutell Lab CRW Site d.233.b.C.trachomatis.L2 2941 CRW_00490 d.233.b.D.radiodurans.rrnB 23S rRNA Deinococcus radiodurans Gutell Lab CRW Site d.233.b.D.radiodurans.rrnB 2880

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)