RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00461 d.16.m.T.syrichta 16S rRNA Unknown Gutell Lab CRW Site d.16.m.T.syrichta 959 CRW_00462 d.16.m.V.ursinus 16S rRNA Unknown Gutell Lab CRW Site d.16.m.V.ursinus 958 CRW_00463 d.16.m.X.laevis 16S rRNA Xenopus laevis Gutell Lab CRW Site d.16.m.X.laevis 945 CRW_00464 d.16.m.Z.californianus 16S rRNA Unknown Gutell Lab CRW Site d.16.m.Z.californianus 962 CRW_00465 d.16.m.Z.mays 16S rRNA Unknown Gutell Lab CRW Site d.16.m.Z.mays 1962 CRW_00466 d.16.y.C.paradoxa 16S rRNA Unknown Gutell Lab CRW Site d.16.y.C.paradoxa 1495 CRW_00467 d.233.a.H.marismortui.1 23S rRNA Haloarcula marismortui Gutell Lab CRW Site d.233.a.H.marismortui.1 2925 CRW_00468 d.233.a.H.marismortui.2 23S rRNA Unknown Gutell Lab CRW Site d.233.a.H.marismortui.2 2930 CRW_00469 d.233.a.H.marismortui.3 23S rRNA Unknown Gutell Lab CRW Site d.233.a.H.marismortui.3 2930 CRW_00470 d.233.a.T.celer 23S rRNA Unknown Gutell Lab CRW Site d.233.a.T.celer 3029

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)