RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00711 Woli.succ._BX571661_1-369 tmRNA Unknown tmRNA Database Woli.succ._BX571661_1-369 369 TMR_00712 Xant.axon._AE011783_1-397 tmRNA Unknown tmRNA Database Xant.axon._AE011783_1-397 397 TMR_00713 Xant.camp._AE012247_1-397 tmRNA Unknown tmRNA Database Xant.camp._AE012247_1-397 397 TMR_00714 Xant.camp._AM039952_1-397 tmRNA Unknown tmRNA Database Xant.camp._AM039952_1-397 397 TMR_00715 Xant.oryz._AE013598_1-397 tmRNA Unknown tmRNA Database Xant.oryz._AE013598_1-397 397 TMR_00716 Xyle.fast._AE003849_1-355 tmRNA Unknown tmRNA Database Xyle.fast._AE003849_1-355 355 TMR_00717 Xyle.fast._AE004078_1-355 tmRNA Unknown tmRNA Database Xyle.fast._AE004078_1-355 355 TMR_00718 Xyle.fast._AE009442_1-355 tmRNA Unknown tmRNA Database Xyle.fast._AE009442_1-355 355 TMR_00719 Xyle.fast._TRW-155919_1-355 tmRNA Unknown tmRNA Database Xyle.fast._TRW-155919_1-355 355 TMR_00720 Xyle.fast._TRW-155920_1-355 tmRNA Unknown tmRNA Database Xyle.fast._TRW-155920_1-355 355

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)