RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00602 Thal.pseu._TRW-296543_1-344 tmRNA Unknown tmRNA Database Thal.pseu._TRW-296543_1-344 344 TMR_00603 Thal.weis._AF049491_1-348 tmRNA Unknown tmRNA Database Thal.weis._AF049491_1-348 348 TMR_00604 Ther.comm._TRW-289377_1-355 tmRNA Unknown tmRNA Database Ther.comm._TRW-289377_1-355 355 TMR_00605 Ther.elon._BA000039_1-386 tmRNA Unknown tmRNA Database Ther.elon._BA000039_1-386 386 TMR_00606 Ther.fusc._CP000088_1-372 tmRNA Unknown tmRNA Database Ther.fusc._CP000088_1-372 372 TMR_00607 Ther.mari._TRW-243274-1_1-356 tmRNA Unknown tmRNA Database Ther.mari._TRW-243274-1_1-356 356 TMR_00608 Ther.mari._TRW-243274-2_1-357 tmRNA Unknown tmRNA Database Ther.mari._TRW-243274-2_1-357 357 TMR_00609 Ther.neap._TRW-309803_1-357 tmRNA Unknown tmRNA Database Ther.neap._TRW-309803_1-357 357 TMR_00610 Ther.rose._TRW-309801_1-353 tmRNA Unknown tmRNA Database Ther.rose._TRW-309801_1-353 353 TMR_00611 Ther.teng._AE013063_1-351 tmRNA Unknown tmRNA Database Ther.teng._AE013063_1-351 351

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)