RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00582 Stre.suis._TRW-286604_1-348 tmRNA Unknown tmRNA Database Stre.suis._TRW-286604_1-348 348 TMR_00583 Stre.ther._AF375568_1-350 tmRNA Unknown tmRNA Database Stre.ther._AF375568_1-350 350 TMR_00584 Stre.ther._CP000024_1-350 tmRNA Unknown tmRNA Database Stre.ther._CP000024_1-350 350 TMR_00585 Stre.ther._CP000419_1-350 tmRNA Unknown tmRNA Database Stre.ther._CP000419_1-350 350 TMR_00586 Stre.uber._TRW-218495_1-350 tmRNA Unknown tmRNA Database Stre.uber._TRW-218495_1-350 350 TMR_00587 Sulf.azor._TRW-204536_1-351 tmRNA Unknown tmRNA Database Sulf.azor._TRW-204536_1-351 351 TMR_00588 Syne.elon._TRW-32046_1-394 tmRNA Unknown tmRNA Database Syne.elon._TRW-32046_1-394 394 TMR_00589 Syne.spec._AB003477_1-394 tmRNA Unknown tmRNA Database Syne.spec._AB003477_1-394 394 TMR_00590 Syne.spec._D90916_1-396 tmRNA Unknown tmRNA Database Syne.spec._D90916_1-396 396 TMR_00591 Syne.spec._TRW-110662_1-461 tmRNA Unknown tmRNA Database Syne.spec._TRW-110662_1-461 461

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)