RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00431 Porp.purp._TRW-2787_1-323 tmRNA Unknown tmRNA Database Porp.purp._TRW-2787_1-323 323 TMR_00432 Prev.inte._TRW-246198_1-400 tmRNA Unknown tmRNA Database Prev.inte._TRW-246198_1-400 400 TMR_00433 Prev.rumi._TRW-264731_1-401 tmRNA Unknown tmRNA Database Prev.rumi._TRW-264731_1-401 401 TMR_00434 Prio.lanc._AF550353_1-360 tmRNA Unknown tmRNA Database Prio.lanc._AF550353_1-360 360 TMR_00435 Proc.mari._TRW-167539_1-461 tmRNA Unknown tmRNA Database Proc.mari._TRW-167539_1-461 461 TMR_00436 Proc.mari._TRW-59919_1-459 tmRNA Unknown tmRNA Database Proc.mari._TRW-59919_1-459 459 TMR_00437 Proc.mari._TRW-59920_1-459 tmRNA Unknown tmRNA Database Proc.mari._TRW-59920_1-459 459 TMR_00438 Proc.mari._TRW-74547_1-462 tmRNA Unknown tmRNA Database Proc.mari._TRW-74547_1-462 462 TMR_00439 Prop.acne._AE017283_1-371 tmRNA Unknown tmRNA Database Prop.acne._AE017283_1-371 371 TMR_00440 Prop.acne._TRW-1747-1_1-371 tmRNA Unknown tmRNA Database Prop.acne._TRW-1747-1_1-371 371

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)