RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00420 Past.mult._AE006115_1-367 tmRNA Unknown tmRNA Database Past.mult._AE006115_1-367 367 TMR_00422 Pedi.pent._CP000422_1-369 tmRNA Unknown tmRNA Database Pedi.pent._CP000422_1-369 369 TMR_00423 Pelo.carb._CP000142_1-358 tmRNA Unknown tmRNA Database Pelo.carb._CP000142_1-358 358 TMR_00424 Phot.asym._TRW-291112_1-364 tmRNA Unknown tmRNA Database Phot.asym._TRW-291112_1-364 364 TMR_00425 Phot.lumi._BX571870_1-364 tmRNA Unknown tmRNA Database Phot.lumi._BX571870_1-364 364 TMR_00426 Phot.phos._AY040837_1-370 tmRNA Unknown tmRNA Database Phot.phos._AY040837_1-370 370 TMR_00427 Phot.prof._CR378665_1-368 tmRNA Unknown tmRNA Database Phot.prof._CR378665_1-368 368 TMR_00428 Plec.bory._AY082652_1-391 tmRNA Unknown tmRNA Database Plec.bory._AY082652_1-391 391 TMR_00429 Pola.spec._CP000316_1-387 tmRNA Unknown tmRNA Database Pola.spec._CP000316_1-387 387 TMR_00430 Porp.ging._TRW-242619_1-407 tmRNA Unknown tmRNA Database Porp.ging._TRW-242619_1-407 407

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)