RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00350 Myco.aviu._TRW-243243_1-368 tmRNA Unknown tmRNA Database Myco.aviu._TRW-243243_1-368 368 TMR_00351 Myco.bovi._TRW-1765_1-368 tmRNA Unknown tmRNA Database Myco.bovi._TRW-1765_1-368 368 TMR_00352 Myco.Bxz1._AY129337_1-437 tmRNA Unknown tmRNA Database Myco.Bxz1._AY129337_1-437 437 TMR_00353 Myco.capr._D13067_1-411 tmRNA Unknown tmRNA Database Myco.capr._D13067_1-411 411 TMR_00354 Myco.capr._S67602_1-408 tmRNA Unknown tmRNA Database Myco.capr._S67602_1-408 408 TMR_00355 Myco.chel._TRW-1774_1-368 tmRNA Unknown tmRNA Database Myco.chel._TRW-1774_1-368 368 TMR_00356 Myco.flav._TRW-1776_1-369 tmRNA Unknown tmRNA Database Myco.flav._TRW-1776_1-369 369 TMR_00357 Myco.gall._AE015450_1-408 tmRNA Unknown tmRNA Database Myco.gall._AE015450_1-408 408 TMR_00358 Myco.geni._TRW-243273_1-388 tmRNA Unknown tmRNA Database Myco.geni._TRW-243273_1-388 388 TMR_00359 Myco.geni._U39713_1-385 tmRNA Unknown tmRNA Database Myco.geni._U39713_1-385 385

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)