RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00116 Chlo.aura._AY040836_1-361 tmRNA Unknown tmRNA Database Chlo.aura._AY040836_1-361 361 TMR_00117 Chlo.chlo._CP000108_1-401 tmRNA Unknown tmRNA Database Chlo.chlo._CP000108_1-401 401 TMR_00118 Chlo.tepi._TRW-194439_1-404 tmRNA Unknown tmRNA Database Chlo.tepi._TRW-194439_1-404 404 TMR_00119 Chro.sale._CP000285_1-380 tmRNA Unknown tmRNA Database Chro.sale._CP000285_1-380 380 TMR_00120 Chro.spec._AY082650_1-383 tmRNA Unknown tmRNA Database Chro.spec._AY082650_1-383 383 TMR_00121 Chro.viol._AE016825_1-365 tmRNA Unknown tmRNA Database Chro.viol._AE016825_1-365 365 TMR_00122 Chro.viol._TRW-536_1-366 tmRNA Unknown tmRNA Database Chro.viol._TRW-536_1-366 366 TMR_00123 Citr.rode._TRW-67825_1-365 tmRNA Unknown tmRNA Database Citr.rode._TRW-67825_1-365 365 TMR_00124 Clav.mich._TRW-31964_1-376 tmRNA Unknown tmRNA Database Clav.mich._TRW-31964_1-376 376 TMR_00125 Clos.acet._AE001437_1-359 tmRNA Unknown tmRNA Database Clos.acet._AE001437_1-359 359

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)