RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00352 TRY.BR-A SRP RNA Unknown SRP Database TRY.BR-A 273 SRP_00353 TRY.BR-B SRP RNA Unknown SRP Database TRY.BR-B 276 SRP_00354 TRY.CON. SRP RNA Unknown SRP Database TRY.CON. 279 SRP_00355 TRY.VIV. SRP RNA Unknown SRP Database TRY.VIV. 290 SRP_00356 URE.URE. SRP RNA Unknown SRP Database URE.URE. 101 SRP_00357 VIB.CHO. SRP RNA Unknown SRP Database VIB.CHO. 104 SRP_00358 VIB.PAR. SRP RNA Unknown SRP Database VIB.PAR. 113 SRP_00359 VIB.VU-A SRP RNA Unknown SRP Database VIB.VU-A 111 SRP_00360 VIB.VU-B SRP RNA Unknown SRP Database VIB.VU-B 111 SRP_00361 VOL.CA-A. SRP RNA Unknown SRP Database VOL.CA-A. 290

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)