RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00777 Sprinzl tRNA RK7550 tRNA Unknown Sprinzl tRNA Database RK7550 73 SPR_00810 Sprinzl tRNA RL1664 tRNA Unknown Sprinzl tRNA Database RL1664 85 SPR_00838 Sprinzl tRNA RL5880 tRNA HUMAN Sprinzl tRNA Database RL5880 78 SPR_00944 Sprinzl tRNA RQ8560 tRNA Unknown Sprinzl tRNA Database RQ8560 76 SPR_01103 Sprinzl tRNA RW4640 tRNA Unknown Sprinzl tRNA Database RW4640 60 SPR_01185 Sprinzl tRNA RZ7540 tRNA Unknown Sprinzl tRNA Database RZ7540 87 SPR_01186 Sprinzl tRNA RZ7570 tRNA Unknown Sprinzl tRNA Database RZ7570 88 SPR_01187 Sprinzl tRNA RZ7790 tRNA Unknown Sprinzl tRNA Database RZ7790 87 SPR_01188 Sprinzl tRNA RZ9240 tRNA Unknown Sprinzl tRNA Database RZ9240 87 SPR_01190 Sprinzl tRNA RZ9290 tRNA XENOPUS LAEVIS Sprinzl tRNA Database RZ9290 87

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)