RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00275 Sprinzl tRNA RM1660 tRNA Unknown Sprinzl tRNA Database RM1660 77 SPR_00281 Sprinzl tRNA RM4640 tRNA Unknown Sprinzl tRNA Database RM4640 64 SPR_00282 Sprinzl tRNA RM5220 tRNA Unknown Sprinzl tRNA Database RM5220 72 SPR_00289 Sprinzl tRNA RN0260 tRNA Unknown Sprinzl tRNA Database RN0260 77 SPR_00320 Sprinzl tRNA RP4000 tRNA Unknown Sprinzl tRNA Database RP4000 75 SPR_00322 Sprinzl tRNA RP7630 tRNA Unknown Sprinzl tRNA Database RP7630 75 SPR_00323 Sprinzl tRNA RP7631 tRNA Unknown Sprinzl tRNA Database RP7631 75 SPR_00324 Sprinzl tRNA RP7650 tRNA Unknown Sprinzl tRNA Database RP7650 75 SPR_00330 Sprinzl tRNA RQ1140 tRNA Unknown Sprinzl tRNA Database RQ1140 75 SPR_00344 Sprinzl tRNA RQ9990 tRNA HUMAN Sprinzl tRNA Database RQ9990 75

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)