RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00828 Bicoid 3 prime-UTR regulatory element, RF00551, M32123.1/262-812 Other RNA Unknown Rfam Database RF00551 M32123.1/812-262 551 RFA_00829 Bicoid 3 prime-UTR regulatory element, RF00551, M32124.1/262-812 Other RNA Unknown Rfam Database RF00551 M32124.1/812-262 551 RFA_00830 Bicoid 3 prime-UTR regulatory element, RF00551, M32125.1/227-779 Other RNA Unknown Rfam Database RF00551 M32125.1/779-227 553 RFA_00831 Bicoid 3 prime-UTR regulatory element, RF00551, M32126.1/307-857 Other RNA Unknown Rfam Database RF00551 M32126.1/857-307 551 SPR_00012 Sprinzl tRNA RA7630 tRNA Unknown Sprinzl tRNA Database RA7630 76 SPR_00013 Sprinzl tRNA RA7650 tRNA Unknown Sprinzl tRNA Database RA7650 76 SPR_00069 Sprinzl tRNA RF2060 tRNA Unknown Sprinzl tRNA Database RF2060 76 SPR_00074 Sprinzl tRNA RF3800 tRNA Unknown Sprinzl tRNA Database RF3800 76 SPR_00075 Sprinzl tRNA RF4000 tRNA Unknown Sprinzl tRNA Database RF4000 74 SPR_00079 Sprinzl tRNA RF5280 tRNA Unknown Sprinzl tRNA Database RF5280 71

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)