RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00762 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, U52600.1/1419-1461 Other RNA Unknown Rfam Database RF00164 U52600.1/1461-1419 43 RFA_00763 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, Y15936.2/6871-6913 Other RNA Unknown Rfam Database RF00164 Y15936.2/6913-6871 43 RFA_00764 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, Y15937.2/6358-6400 Other RNA Unknown Rfam Database RF00164 Y15937.2/6400-6358 43 RFA_00765 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, Y15938.2/2354-2396 Other RNA Unknown Rfam Database RF00164 Y15938.2/2396-2354 43 RFA_00766 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, Z66541.1/2326-2368 Other RNA Unknown Rfam Database RF00164 Z66541.1/2368-2326 43 RFA_00781 Gammaretrovirus core encapsidation signal, RF00374, AF019230.1/276-376 Cis-reg. element Unknown Rfam Database RF00374 AF019230.1/376-276 101 RFA_00782 Gammaretrovirus core encapsidation signal, RF00374, AF033811.1/12-112 Cis-reg. element Unknown Rfam Database RF00374 AF033811.1/112-12 101 RFA_00783 Gammaretrovirus core encapsidation signal, RF00374, AF169256.1/297-396 Cis-reg. element Unknown Rfam Database RF00374 AF169256.1/396-297 100 RFA_00784 Gammaretrovirus core encapsidation signal, RF00374, AF411814.1/275-375 Cis-reg. element Unknown Rfam Database RF00374 AF411814.1/375-275 101 RFA_00785 Gammaretrovirus core encapsidation signal, RF00374, AF462057.1/276-376 Cis-reg. element Unknown Rfam Database RF00374 AF462057.1/376-276 101

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)