RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00752 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY304457.1/197-239 Other RNA Unknown Rfam Database RF00164 AY304457.1/239-197 43 RFA_00753 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY304462.1/197-239 Other RNA Unknown Rfam Database RF00164 AY304462.1/239-197 43 RFA_00754 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY304470.1/197-239 Other RNA Unknown Rfam Database RF00164 AY304470.1/239-197 43 RFA_00755 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY338174.1/29515-29557 Other RNA Unknown Rfam Database RF00164 AY338174.1/29557-29515 43 RFA_00756 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY536760.3/1545-1587 Other RNA Unknown Rfam Database RF00164 AY536760.3/1587-1545 43 RFA_00757 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY641576.1/27283-27325 Other RNA Unknown Rfam Database RF00164 AY641576.1/27325-27283 43 RFA_00758 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, L06252.1/368-410 Other RNA Unknown Rfam Database RF00164 L06252.1/410-368 43 RFA_00759 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, L06253.1/392-434 Other RNA Unknown Rfam Database RF00164 L06253.1/434-392 43 RFA_00760 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, S68561.1/2636-2678 Other RNA Unknown Rfam Database RF00164 S68561.1/2678-2636 43 RFA_00761 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, U52595.1/1520-1562 Other RNA Unknown Rfam Database RF00164 U52595.1/1562-1520 43

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)