RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00732 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AB046864.1/2311-2353 Other RNA Unknown Rfam Database RF00164 AB046864.1/2353-2311 43 RFA_00733 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AF056197.1/2428-2470 Other RNA Unknown Rfam Database RF00164 AF056197.1/2470-2428 43 RFA_00734 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AF111995.1/1596-1638 Other RNA Unknown Rfam Database RF00164 AF111995.1/1638-1596 43 RFA_00735 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AF111997.1/1443-1485 Other RNA Unknown Rfam Database RF00164 AF111997.1/1485-1443 43 RFA_00736 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AF257226.1/425-467 Other RNA Unknown Rfam Database RF00164 AF257226.1/467-425 43 RFA_00737 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AF361253.1/8721-8763 Other RNA Unknown Rfam Database RF00164 AF361253.1/8763-8721 43 RFA_00738 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AJ278335.1/370-412 Other RNA Unknown Rfam Database RF00164 AJ278335.1/412-370 43 RFA_00739 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AJ619580.1/109-151 Other RNA Unknown Rfam Database RF00164 AJ619580.1/151-109 43 RFA_00740 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AJ619582.1/83-125 Other RNA Unknown Rfam Database RF00164 AJ619582.1/125-83 43 RFA_00741 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AJ619583.1/83-125 Other RNA Unknown Rfam Database RF00164 AJ619583.1/125-83 43

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)