RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00627 RNase E 5 prime UTR element, RF00040, AF259267.1/37-374 RNase E 5 UTR Unknown Rfam Database RF00040 AF259267.1/374-37 338 RFA_00628 RNase E 5 prime UTR element, RF00040, AF259269.1/38-376 RNase E 5 UTR Unknown Rfam Database RF00040 AF259269.1/376-38 339 RFA_00629 RNase E 5 prime UTR element, RF00040, AJ414149.1/78777-78440 RNase E 5 UTR Unknown Rfam Database RF00040 AJ414149.1/78440-78777 338 RFA_00630 RNase E 5 prime UTR element, RF00040, AL627269.1/129907-129570 RNase E 5 UTR Unknown Rfam Database RF00040 AL627269.1/129570-129907 338 RFA_00631 RNase E 5 prime UTR element, RF00040, D90744.1/11682-11346 RNase E 5 UTR Unknown Rfam Database RF00040 D90744.1/11346-11682 337 RFA_00639 7SK RNA, RF00100, X04992.1/244-574 7SK RNA Unknown Rfam Database RF00100 X04992.1/574-244 331 RFA_00645 Vimentin 3 prime UTR protein-binding region, RF00109, BC053115.1/1499-1568 Cis-reg. element Unknown Rfam Database RF00109 BC053115.1/1568-1499 70 RFA_00653 Vimentin 3 prime UTR protein-binding region, RF00109, S76850.1/1539-1604 Cis-reg. element Unknown Rfam Database RF00109 S76850.1/1604-1539 66 RFA_00730 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AB033998.1/6702-6744 Other RNA Unknown Rfam Database RF00164 AB033998.1/6744-6702 43 RFA_00731 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AB037273.1/2393-2435 Other RNA Unknown Rfam Database RF00164 AB037273.1/2435-2393 43

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)