RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00597 Vertebrate telomerase RNA, RF00024, AF221910.1/112-554 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221910.1/554-112 443 RFA_00598 Vertebrate telomerase RNA, RF00024, AF221913.1/109-520 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221913.1/520-109 412 RFA_00599 Vertebrate telomerase RNA, RF00024, AF221921.1/98-548 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221921.1/548-98 451 RFA_00600 Vertebrate telomerase RNA, RF00024, AF221935.1/112-602 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221935.1/602-112 491 RFA_00601 Vertebrate telomerase RNA, RF00024, AF221939.1/99-544 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221939.1/544-99 446 RFA_00602 Vertebrate telomerase RNA, RF00024, U85256.1/1-451 Vert. Telo. RNA Unknown Rfam Database RF00024 U85256.1/451-1 451 RFA_00603 Ciliate telomerase RNA, RF00025, AF399707.1/2181-2345 Cili. Telo. RNA Tetrahymena thermophila Rfam Database RF00025 AF399707.1/2345-2181 165 RFA_00604 Ciliate telomerase RNA, RF00025, AF417612.1/228-392 Cili. Telo. RNA Unknown Rfam Database RF00025 AF417612.1/392-228 165 RFA_00605 Ciliate telomerase RNA, RF00025, AJ132318.1/1-175 Cili. Telo. RNA Unknown Rfam Database RF00025 AJ132318.1/175-1 175 RFA_00606 Ciliate telomerase RNA, RF00025, M33461.1/140-346 Cili. Telo. RNA Unknown Rfam Database RF00025 M33461.1/346-140 207

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)