RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00587 Y RNA, RF00019, L27530.1/1-99 Y RNA Unknown Rfam Database RF00019 L27530.1/99-1 99 RFA_00588 Y RNA, RF00019, L27537.1/1-96 Y RNA Unknown Rfam Database RF00019 L27537.1/96-1 96 RFA_00589 Y RNA, RF00019, L32608.1/283-376 Y RNA Unknown Rfam Database RF00019 L32608.1/376-283 94 RFA_00590 Y RNA, RF00019, L41730.1/373-476 Y RNA Unknown Rfam Database RF00019 L41730.1/476-373 104 RFA_00591 Y RNA, RF00019, U34827.1/1-100 Y RNA Unknown Rfam Database RF00019 U34827.1/100-1 100 RFA_00592 Y RNA, RF00019, U34828.1/1-110 Y RNA Unknown Rfam Database RF00019 U34828.1/110-1 110 RFA_00593 Y RNA, RF00019, U94704.1/1-75 Y RNA Unknown Rfam Database RF00019 U94704.1/75-1 75 RFA_00594 Y RNA, RF00019, U94705.1/86-160 Y RNA Unknown Rfam Database RF00019 U94705.1/160-86 75 RFA_00595 Y RNA, RF00019, X57566.1/1-93 Y RNA Unknown Rfam Database RF00019 X57566.1/93-1 93 RFA_00596 Y RNA, RF00019, X69719.1/5-114 Y RNA Unknown Rfam Database RF00019 X69719.1/114-5 110

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)