RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01144 MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS Other rRNA CANIS FAMILIARIS RCSB Protein Data Bank 2J37 408 PDB_01146 MODEL FOR THIOSTREPTON BINDING TO THE RIBOSOMAL L11-RNA Other rRNA STREPTOMYCES AZUREUS RCSB Protein Data Bank 2JQ7 58 PDB_01150 NMR REVEALS ABSENCE OF HYDROGEN BONDING IN ADJACENT UU AND AG MISMATCHES IN AN ISOLATED INTERNAL LOO Other rRNA Unknown RCSB Protein Data Bank 2JSE 22 PDB_01152 SOLUTION STRUCTURE OF THE FRAMESHIFT-INDUCING RNA STEM-LOOP IN SIV Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2JTP 34 PDB_01154 STRUCTURE OF A HIGH AFFINITY ANTI-NFKB RNA APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2JWV 29 PDB_01156 CRYSTAL STRUCTURE OF AN RNA DOMAIN FROM HEPATITIS C VIRUS. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2NOK 88 PDB_01157 STRUCTURE OF RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES RNA IRES SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 2NOQ 317 PDB_01158 CRYSTAL STRUCTURE OF A JUNCTIONED HAIRPIN RIBOZYME INCORPORATING 9ATOM LINKER AND 2'-DEOXY 2'-AMINO Hairp. Ribozyme Unknown RCSB Protein Data Bank 2NPY 61 PDB_01159 CRYSTAL STRUCTURE OF JUNCTIONED HAIRPIN RIBOZYME INCORPORATING SYNTHETIC PROPYL LINKER Hairp. Ribozyme Unknown RCSB Protein Data Bank 2NPZ 61 PDB_01161 CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA Other RNA ESCHERICHIA COLI RCSB Protein Data Bank 2NR0 272

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)