RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00952 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBO 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9M 1673 PDB_00953 50S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF RELEASE FACTOR RF2, TRNAS AND MRNA BOUND TO THE RI 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9N 2937 PDB_00954 30S RIBOSOMAL SUBUNIT, TRNAS AND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9O 1673 PDB_00955 50S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2B9P 2937 PDB_00956 CRYSTAL STRUCTURE OF A MINIMAL, MUTANT ALL-RNA HAIRPIN RIBOZYME (U39C, G8MTU) Other Ribozyme Unknown RCSB Protein Data Bank 2BCY 61 PDB_00957 CRYSTAL STRUCTURE OF A MINIMAL, MUTANT ALL-RNA HAIRPIN RIBOZYME (U39C, G8I, 2'DEOXY A-1) Other Ribozyme Unknown RCSB Protein Data Bank 2BCZ 61 PDB_00958 COMPLEX BETWEEN PAROMOMYCIN DERIVATIVE JS5-39 AND THE 16S- RRNA A-SITE. Other RNA Unknown RCSB Protein Data Bank 2BE0 42 PDB_00959 COMPLEX BETWEEN PAROMOMYCIN DERIVATIVE JS4 AND THE 16S-RRNA A SITE Other RNA Unknown RCSB Protein Data Bank 2BEE 42 PDB_00980 CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET) tRNA AQUIFEX AEOLICUS RCSB Protein Data Bank 2CSX 150 PDB_00985 CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TMRNA FROM THERMUS THERMOPHILUS HB8 Other RNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2CZJ 248

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)