RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00797 TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1W2B 2876 PDB_00799 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1WNE 13 PDB_00805 STRUCTURE OF THE TETRAHYMENA RIBOZYME: BASE TRIPLE SANDWICH AND METAL ION AT THE ACTIVE SITE Other Ribozyme TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1X8W 968 PDB_00806 AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C Hairp. Ribozyme Unknown RCSB Protein Data Bank 1X9C 61 PDB_00807 AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C Hairp. Ribozyme Unknown RCSB Protein Data Bank 1X9K 62 PDB_00808 INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT F 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1XBP 2884 PDB_00810 THE STRUCTURE OF A RIGOROUSLY CONSERVED RNA ELEMENT WITHIN THE SARS VIRUS GENOME Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XJR 47 PDB_00811 CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITH AAG-MRNA IN THE DECODING CENTER 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1XMO 1521 PDB_00812 CRYSTAL STRUCTURE OF T6A37-ASLLYSUUU AAA-MRNA BOUND TO THE DECODING CENTER 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1XMQ 1522 PDB_00813 STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX IN THE CONTEXT OF THE DECODING CENTER 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1XNQ 1522

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)