RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00150 SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1M82 25 PDB_00154 SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MFY 31 PDB_00159 GUAA TETRALOOP MUTANT OF SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA 23S rRNA E. COLI RCSB Protein Data Bank 1MSY 27 PDB_00164 THE TANDEM, SHEARED PP PAIRS IN 5'(RGGCPPGCCU)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MV6 18 PDB_00166 CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE Other RNA Unknown RCSB Protein Data Bank 1MWL 42 PDB_00168 SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1N53 25 PDB_00175 THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1NUJ 96 PDB_00176 THE LEADZYME RIBOZYME BOUND TO MG(H2O)6(II) AND SR(II) AT 1.8 A RESOLUTION Other Ribozyme Unknown RCSB Protein Data Bank 1NUV 96 PDB_00178 THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT W Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1O15 33 PDB_00182 NMR STRUCTURE OF THE ACTIVE CONFORMATION OF THE VS RIBOZYME CLEAVAGE SITE Other Ribozyme Unknown RCSB Protein Data Bank 1OW9 23

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)