RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00030 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION 5S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1C2X 120 PDB_00032 NMR STRUCTURE OF SRP RNA DOMAIN IV SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 1CQ5 43 PDB_00033 NMR STRUCTURE OF SRP RNA DOMAIN IV SRP RNA ESCHERICHIA COLI RCSB Protein Data Bank 1CQL 43 PDB_00036 29-MER FRAGMENT OF HUMAN SRP RNA HELIX 6 SRP RNA Unknown RCSB Protein Data Bank 1D4R 84 PDB_00039 CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1DUQ 104 PDB_00072 PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA Viral & Phage BACTERIOPHAGE PHI29 RCSB Protein Data Bank 1FOQ 545 PDB_00075 EUKARYOTIC DECODING REGION A-SITE RNA Other rRNA TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1FYO 27 PDB_00076 EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX Other rRNA TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1FYP 27 PDB_00078 CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING Other Ribozyme Unknown RCSB Protein Data Bank 1GID 316 PDB_00079 A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME Other Ribozyme TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1GRZ 494

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)